Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs139405921 chr21:47810133 CAGG/C 2.13E-5 520 38.97 46.18 6.87 KM Plot
KIRC rs139654766 chr21:44322145 C/T 7.3E-10 516 42.47 33.07 7.18 KM Plot
KIRC rs140011703 chr3:48256462 CA/C 6.02E-5 513 39.7 40.93 21.12 KM Plot
KIRC rs140070906 chr21:47849205 G/A 2.83E-5 518 38.95 47.1 6.87 KM Plot
KIRC rs140369140 chr2:67532179 T/TA 1.98E-7 523 39.85 37.73 2.03 KM Plot
KIRC rs141365396 chr4:16206728 T/TG 3.2E-6 527 38.95 46.8 8.22 KM Plot
KIRC rs142358565 chr6:130411342 C/CATAT 1.65E-5 522 39.23 43.68 7.4 KM Plot
KIRC rs142952810 chr21:47959976 G/GCTGTGC 1.11E-5 524 39.17 41.4 6.87 KM Plot
KIRC rs143252850 chr21:44263682 GGC/G 2.1E-7 516 41.13 31.75 7.18 KM Plot
KIRC rs143299891 chr3:48279272 A/AT 7.51E-5 519 39.53 41.27 19.13 KM Plot
KIRC rs143664939 chr11:34762982 C/T 1.53E-7 520 39.62 39.17 3.3 KM Plot
KIRC rs1443368 chr4:16224631 C/T 3.3E-6 526 38.95 46.48 8.22 KM Plot
KIRC rs1443369 chr4:16224671 A/G 3.3E-6 526 38.95 46.48 8.22 KM Plot
KIRC rs145227488 chr11:36134534 TCATA/T 1.53E-5 518 37.83 48.2 9.18 KM Plot
KIRC rs145277575 chr21:47728158 C/T 2.62E-5 514 38.97 43.3 17.23 KM Plot